API

Import HieDiff as:

import HieDiff as hd

spatial_reconstruction(adata[, alpha, ...])	Spatial reconstruction of gene expression matrix.
run_HieDiff(adata[, n_epochs, n_hidden, ...])	Hierarchical flow diffusion for spatial transcriptomics.
run_HieDiff_minibatch(adata[, n_epochs, ...])	The mini-batch implementation for hierarchical flow diffusion.
regulons(adata[, tf_names, ...])	Regulon inference for spatial transcriptomics [Aibar17].
aucell(adata[, auc_threshold, noweights, ...])	Compute the regulon activity AUCell matrix [Aibar17].
refine_spatial_domains(adata, domain_key[, ...])	Refine spatial domains based on spatial neighbors.